molgenis/molgenis-pipelines — pull request #41 by freerkvandijk (2013-05-16 12:25:31+00:00)
Title: Quick concordance check pipeline

Pipeline to check concordance one sample against all samples on array.vcf file.

This pipeline performs a quick concordance check on a BAM file. Only to be used when suspicion of sample swap or contamination. Afterwards one should redo the regular concordance check with the best-guess sample output from this pipeline.