SimTk/msmbuilder — pull request #166 by kyleabeauchamp (2013-03-12 17:50:34+00:00)
Title: Reworked lumping

So I took a stab at "cleaning up" our lumping code. In the process, I fixed the warning issues Dan mentioned.

Can someone tell me if this layout is cleaner than the previous one? Some of the key changes are:

PCCA, PCCAPlus objects
Multiple files
Cleaned up the PCCA+ barrier penalty stuff
Raise an error if PCCA+ somehow settles for a non-feasible point