SciLifeLab/scilifelab — pull request #197 by percyfal (2013-02-20 15:03:17+00:00)
Title: Added code to update hs_metrics data for amplicon projects.

Fixes issue #196

This solution requires that hs_metrics calculations are performed on a non-deduplicated bam file that should be present. The updated calculations have to be performed manually. If the amplicon option is set, the program looks for hs_metrics files without "dup" in their names, indicating they are non-dedupped.