SimTk/msmbuilder — pull request #129 by schwancr (2013-01-29 21:17:05+00:00)
Title: Added fix to Cluster.py that removes the assignments, generators, and di...

Cluster.py no longer contains individual options for:

- Assignments file
- Distances file (Assignment.h5.distances)
- Generators file
- Output ZMatrix file

Instead, it has a single option: output_dir, and then saves the above data in a regular manner.