qiime/qiime — pull request #649 by wasade (2013-01-25 00:13:56+00:00)
Title: use BIOM Table API instead of per-element lookups

Tests pass for test_otu_category_significance.py but am getting some output over stdout. Both warning messages appear to have been produced present prior to this pull request.

17:09:04 tests@otu_cat_sig_perfbug$ python test_otu_category_significance.py
......................Warning: sample1 is in the sample mapping file but not the OTU table
...../Users/mcdonald/ResearchWork/software/pycogent/cogent/maths/stats/test.py:1159: RuntimeWarning: invalid value encountered in double_scalars
F = between_MS/within_MS
..
----------------------------------------------------------------------
Ran 29 tests in 0.111s

OK