molgenis/molgenis — pull request #183 by dennishendriksen (2012-12-20 12:18:05+00:00)
Title: New molgenis.io, New tuple (READ FIRST!)

- Improvements to org.molgenis.io
- Improvements to org.molgenis.util.tuple
- Replace old IO classes with org.molgenis.io
- Replace old Tuple with org.molgenis.utils.tuple
- Move deprecated IO classes to molgenis_apps/modules/_deprecated
- Move deprecated Tuple classes to molgenis_apps/modules/_deprecated
- Move VcfReader to molgenis_apps/apps/patho
- Remove nsequence and onoff field types
- Use CaseInsensitiveKeyValueTuple in AbstractDatabase
- New feature: generic entities importer
- Add TableReader to read multiple tables
- Bug fix: case sensitivity in SQL queries
- Use MolgenisRequest where applicable instead of 'Tuple request'
- Small stuff: remove commented lines, add annotations etc.