qiime/qiime — pull request #550 by jensreeder (2012-12-17 06:41:05+00:00)
Title: Use qiime_temp_dir to store job_command_file

Job command file is now stored under the temp dir returned by get_qiime_temp_dir().
This fixes #540.

Note that the job submission script, e.g. start_parallel_jobs.py might as well write to the current dir unless the qiime_working_dir is set in the config.