SciLifeLab/scilifelab — pull request #122 by percyfal (2012-12-13 12:06:44+00:00)
Title: Develop - refactor delivery report structure, including failed samples to project report

- add fastq.txt files to keep when restarting analysis (applies to pre-casava workflows)
- major refactoring of delivery_reports.py
- better commenting of workflow
- moved redundant code to functions
- fall back on project samples if no mapping from sample run metrics
to project sample available. NB: this roundabout way of doing it
in the first place is because sometimes there is no mapping to
sample run metrics from project samples
- add 10X cutoff to customcap application qc
- add 'failed' sample to test project summary database
- update tests