qiime/qiime — pull request #514 by jrrideout (2012-12-12 17:16:14+00:00)
Title: Prepping QIIME for new biom-format release

Changes to QIIME (mainly the unit tests) to allow all tests to pass (unit tests and script usage tests) when using the new biom-format release. Will continue to add changes as necessary, since changes are still being made to biom-format for the release tomorrow.

**This pull request is not ready to be merged yet.** I will send an additional comment when the new biom-format release is out and I've verified that all tests are passing.