biopython/biopython — pull request #94 by cbrueffer (2012-11-24 09:37:03+00:00)
Title: Add a commandline wrapper and unittests for the XXmotif motif finding pr...

...ogram.

The resulting MEME file cannot be parsed by Biopython yet, as some
sections the parser expects are missing.

URL: http://xxmotif.genzentrum.lmu.de/

Citations:

Luehr S, Hartmann H, and Söding J. The XXmotif web server for eXhaustive,
weight matriX-based motif discovery in nucleotide sequences,
Nucleic Acids Res. 40: W104-W109 (2012).

Hartmann H, Guthoehrlein EW, Siebert M., Luehr S, and Söding J. P-value
based regulatory motif discovery using positional weight matrices
(to be published)