MG-RAST/Shock — pull request #36 by wtangiit (2012-11-12 16:33:52+00:00)
Title: support bam format indexing (bai), filtering (bam->sam), and "samtools view" APIs

this is the new implementation for bam support (direct streaming); old code was removed from git repo.
the changes were merged locally with Jared latest changes and tested.