qiime/qiime — pull request #443 by jrrideout (2012-11-09 21:14:29+00:00)
Title: Removing deprecation warnings

Removed support for raxml v703 from make_phylogeny.py. Added PyNAST 1.2 as the new dependency version for QIIME. These fixes remove the deprecation warnings related to muscle and raxml.

This pull request fixes issue #429.