mxcl/homebrew — pull request #15716 by 2bits (2012-10-28 16:38:24+00:00)
Title: tophat 2.0.6

- Upgrade to 2.0.6
- Add a patch: intializes variable length arrays to 1 for clang.
- Patch stops a variable length array non-POD element type error.
- Patch reported upstream via email and noted in comments.
- Add an LDFLAG for `-lboost_system-mt` because autoconf doesn't.
- Add a dep on boost because the build requires it and samtools.
- Works with superenv on ML with XCode-4.5.1.