SeqWare/seqware — pull request #3 by denis-yuen (2012-09-27 19:30:05+00:00)
Title: Feature/archetype transfer

Missing SeqWare components added:
seqware-archetype-module
seqware-archetype-workflow

Went on a big goose chase and turned out that we only needed a minor change to the database schema script.

Maven now separates out unit tests and integration tests as follows.

mvn clean install (runs unit tests but skips integration tests (HBase for query engine and Jetty for web service by default)
mvn clean install -DskipTests (skips all unit tests and integration tests)
mvn clean install -DskipITs=false (runs all unit tests and all integration tests)

If you wish to build the whole of SeqWare at once, you will need:

export MAVEN_OPTS="-Xmx1024m -XX:MaxPermSize=512m"
mvn clean install -DskipITs=false

More details at https://wiki.oicr.on.ca/display/SEQWARE/2012/09/26/2012-09-26+-+Maven