VertebrateResequencing/vr-pipe — pull request #6 by jstalker (2012-09-21 16:29:02+00:00)
Title: Bwa index version

bwa v0.5. outputs 6 binary index files from "bwa index". v0.6 bwa reduces this to 3. I've added a check for versions beginning 0.5. that has the 6 files in output_files, whereas all other versions get just the 3 (there isn't an available version of bwa prior to 0.5).