ModelSEED/ModelSEED — pull request #83 by cshenry (2012-09-21 22:34:30+00:00)
Title: Scheme update bugfixes loaders

Changing ObjectBuilder, scheme, table loader, model building, and annotation import.
1.) ObjectBuilder change:
-Added a clearer function to every link attribute
-Recompiled all MS::DB objects
2.) Scheme changes:
-Moved RoleSetRoles into a "roles" link array in RoleSet
-Moved ComplexReactions into a "reactions" link array in Complex
-Added update function to mapping
-Iterated mapping version to 2.0
3.) Table loader:
-Completed work and debugging of ModelSEED::MS::Factories::TableFileFactory
4.) Model builder:
-Fixed bug in model reconstruction code related to scheme changes in biochemistry
-Adjusted code for scheme changes in mapping
5.) Annotation import:
-Fixed numerous minor bugs in annotation import