bioperl/bioperl-live — pull request #42 by daisieh (2012-09-07 00:24:28+00:00)
Title: Refactored next_aln in AlignIO/phylip.pm

I believe that this should work as well as the previous version, if not better. It was getting really hard to understand what was happening in the code in order to make any more fixes.

It also fixes the problem where it chokes on a newline between the header and the sequences.