ModelSEED/ModelSEED — pull request #44 by devoid (2012-09-05 21:50:02+00:00)
Title: Change FBAFormulation and GapfillingFormulation

- FBAFormulation and GapfillingFormulation are now top-level
objects with links back to the Model object.

- This moves the Model version number up to 1.1. Old gapfilling
and fba formulation objects in the model are summarily dropped
on upgrade.

- gapfill and runfba commands should work properly

- Introduced a flag for runfba and gapfill "--norun" which
returns the JSON format for the configuration after processing.