nexml/nexml.java — pull request #5 by balhoff (2012-08-31 19:51:44+00:00)
Title: Categorical data enhancements

@rvosa could you take a look at these changes? They are intended to support independent state sets for standard characters, with labels for the states. Also, polymorphism and uncertainty is supported. I avoided changing the handling of molecular matrices, although some related issues may exist there (not sure).