joey711/phyloseq — pull request #138 by joey711 (2012-08-17 14:59:23+00:00)
Title: v1.1.40 Revised naming scheme for all functions for consistency. 

All old (deprecated) functions have been migrated to a special deprecated source file for easy removal/tracking in future versions. Should add some explanation for the new naming scheme, and a complete table of the suggested function-names and features.