joey711/phyloseq — pull request #130 by joey711 (2012-07-31 22:12:02+00:00)
Title: v1.1.33 Revise merge_species() and taxglom() to more-accurately handle taxonomy data

* Some additional modifications to those funtions' implementation and documentation also added

* Unit tests added for `taxglom`, `merge_species`, and `prune_species`

* Also updated `distance` function documentation so that the `method` argument options have an explicit internal function associated, at which the user can inquire about further details and references.