ModelSEED/Model-SEED-core — pull request #167 by devoid (2012-07-17 23:20:44+00:00)
Title: Initial draft of Anno factory w/ KBase support

@cshenry
I'm working on this since Ross requested that we get some models built for him soon. I'm wondering what the function:

ModelSEED::MS::Utilities::GlobalFunctions::functionToRoles does? I can see that in parses the role string but why are we storing compartment, delimiter, and comment? I worry because this compartment is just derived from the string annotation so it won't be consistent with (a) biochemistry compartments, (b) different annotation sources and (c) if the SEED decides to change the annotation "system".

Can I just pull the Contig > Feature > Role schema from the CDMI for Kbase? Do we need "compartment", "delimiter" and "comment" in the FeatureRole object?