jts/khmer — pull request #1 by spartanem (2012-07-09 23:16:44+00:00)
Title: Jts master patched

Hi Jared,

I work with Titus Brown at Michigan State University. He recently
mentioned to me that you had created a patch for performing digital
normalization using paired reads, and so I looked at what you had done.
I think your code will be quite useful. And, I liked the way you used
Python's iterator/generator machinery to maintain memory efficiency.

I have taken the liberty to generate a Github pull request against the
master branch of your 'jts/khmer' repo. This pull request does the
following:
* Synchronizes your branch to the tip of the 'master' branch of the
'ged-lab/khmer' repo, which is now the official khmer repo.
* Indicates a possible bug in your patch. (There is a comment, which
starts with "QUESTION", that indicates the possible bug.)
* Adds several tests to the test suite in the 'tests' directory. (This
was done so that we can check if future code modifications break the
functionality you have added. In general, we like to add tests for all
new features.)
* Adds some test data to accompany the tests.

If this pull request looks good to you, please feel free to commit it to
your branch and then send a pull request against the 'master' branch of
the 'ged-lab/khmer' repo. We would then be happy to incorporate your
changes.

Thank you and best regards,
Eric