arq5x/gemini — pull request #32 by chapmanb (2012-07-06 11:56:33+00:00)
Title: Handle VCFs with mitochondrial chromosomes and allele number/allele balance

Aaron;
I've been running Gemini over some other variants we've been working on and this is an accumulated set of fixes. There is also a request for cyvcf which coincides with this. It handles:

- VCFs with chrM, which were converted to 'M' instead of the GRCh37 naming of 'MT'.
- BED and VCF files without any data on mitochondrial chromosomes were reporting tabix errors when retrieving instead of no hits.
- Allele balance and allele number returned lists, which generated errors during loading.