GreenGroup/RMG-Py — pull request #80 by nickvandewiele (2012-06-13 14:41:44+00:00)
Title: Flux diagram for chosen species

At the risk of self-promotion, i hereby recommend you this branch:

Instead of creating a global flux diagram with all the important species, this branch gives the option to create a flux diagram centralized around a user chosen species. What it does is:
- prints all the species that are in reactions with the chosen species
- still draws the circles around major species concentrations, and flux-dependent edge widths

Solved merge conflicts due to recently changed method signature updates (Connie's settings parameter)

added a line declaring globally used variables to avoid interpretation as local variables when settings object is not set.

Tested successfully with and without setting a chosen species, but no unit test added...