biopython/biopython — pull request #47 by mattfenwick (2012-06-12 13:15:26+00:00)
Title: Refactor Bio.SeqUtils.ProtParam

1st commit:
- local variable names
- casing
- more semantic
- whitespace
- shadowing of built-ins (list)
- comments: some formatting/correcting/removing
- imports
- used list comprehensions where clearer

2nd commit:
- change implementation of caching so that the callers don't have to worry about whether it's happening or not
- fix comments: out of date, inaccurate, or unformatted

3rd commit:
- add test for flexibility calculation -- previously only the length of the result was checked