bioruby/bioruby — pull request #55 by csw (2012-05-15 01:57:22+00:00)
Title: Use libxml-ruby instead of libxml-jruby to fix JRuby test failures.

The travis-ci Gemfiles currently call for libxml-jruby; this appears
not to support the same API as libxml-ruby, resulting in several tests
in test/unit/bio/db/test_phyloxml.rb failing with "NameError:
uninitialized constant LibXMLJRuby::XML::Parser::Options". Switching
to the C libxml-ruby library allows these tests to pass under JRuby in
1.8 mode.

JRuby in 1.9 mode still fails a few PhyloXML tests due to
https://jira.codehaus.org/browse/JRUBY-6662.