biopython/biopython — pull request #40 by bow (2012-05-11 12:12:09+00:00)
Title: New EMBOSS wrappers + updates to the existing ones.

This pull request adds support for wrapping EMBOSS Stretcher and Needleall.

In addition to that, the parameters for Water and Needle wrappers were also updated:

* Both Water and Needle wrappers can now handle the '-brief' and '-nobrief' switches.
* The Needle wrapper can now handle '-endweight', '-endopen', and '-endgap' options.