SciLifeLab/bcbb — pull request #159 by vals (2012-05-11 13:35:03+00:00)
Title: Master - Monthly merge from Develop

### Key changes

* `nophix` name handling
* Project pruning at flowcell level
* `project_analysis_setup` is now called `project_management`
* Name parsing has been updated to accommodate agilent and rna barcodes
* A 'backup' task has been added
* Manually entered comments in the project read counts worksheets in google docs
are now preserved across updates.
* There also are no longer comment and pass columns in the gdocs project reports.
* OLB 1.9 location file format support has been added.
* A framework for converting Complete Genomics structural variant events to VCF
has been added.
* Fastq files will now be created even if the directory exists.
* Glob to find filtered sequence files have been improved.
* The `--compress` option have been removed from `rsync` transfer to speed up
file transfer.
* Mondrain indexes are now parsed.

For finer detail in changes, see all the commits from a0fe27c0 up to this commit.