biopython/biopython — pull request #38 by bow (2012-05-08 23:26:16+00:00)
Title: added: max_hsps_per_subject option for BLAST+ wrapper

In BLAST 2.2.26+, there is an extra output option 'max_hsps_per_subject' that controls the number of displayed HSPs per hit. This is available in blastn, blastp, blastx, tblastn, tblastx, rpsblast, and psiblast. I don't know if this option is present in previous versions, but I thought it would be handy to have them available in the wrapper.