biopython/biopython — pull request #39 by bow (2012-05-08 23:36:05+00:00)
Title: updated: NCBIStandalone parser for handling 2.2.26+ blasts (incorporating fix from John Comeau)

[There is a recent bug report](https://redmine.open-bio.org/issues/3346), submitting a patch for handling BLAST 2.2.25+ text outputs.

While the patch passes all tests, it only handles BLASTX. When I tried running it against more blast flavors (BLASTN et al.), I discovered that there are some additional minor bugs that could be fixed. So I fixed them and added some test cases + test code, just to be sure it works. The test cases are all 2.2.26+, so there might still be one or two 2.2.25+ cases that do not pass. I could try including some 2.2.25+ cases, if required.