sanger-pathogens/vr-codebase — pull request #81 by CraigPorter (2012-04-30 11:32:20+00:00)
Title: Depth of coverage - mean and SD.

Added mean depth of coverage and standard deviation to TrackQC_Fastq and Mapping pipelines.

- The TrackQG_Bam pipeline is unaffected, results are only generated for the TrackQC_Fastq pipeline.
- Mean depth of coverage and coverage standard deviation are only output if the get_genome_coverage
option (only used by Pathogens) is set in the conf file.