jeffalstott/Helix — pull request #1 by kdaily (2012-04-10 16:16:08+00:00)
Title: Added code to submit via qsub

Hi, I've added some code to submit qsub jobs as well. A given or temporary script file to run a command is given, and the job can be run in normal or blocking mode (waits for command to complete before the qsub command exits). I've been using this in some RNAseq pipeline code, which I will likely post soon as well. Let me know if you would like to include it!

I didn't make any changes to the Swarm class; I added my name to the author list at the top, and a few imports; I can move those down as well if that's your style.

Cheers,

Kenny Daily