BRAINSia/BRAINSStandAlone — pull request #53 by reginakim (2012-03-30 17:33:15+00:00)
Title: BRAINSABC bug fix

Please review the code and confirm it is correct. The code change include some minor changes in BRAINSCut and a bug fix for BRAINSABC. I don't mind any BRAINSCut change excluded from pull request.
I tested and it passed on my data set.
The detailed description of failure case is appeard on Jira (if you do have access): https://www.icts.uiowa.edu/jira/browse/PREDICTIMG-1228 ,

I am pretty sure the code change is right thing to do, but please confirm since I am not really familar with BRAINSABC code.

Regina