sanger-pathogens/vr-codebase — pull request #76 by CraigPorter (2012-03-30 10:36:53+00:00)
Title: Removed setup_reference() from smalt wrapper.

Removed contents of the smalt wrapper function setup_reference() in favour of setting-up reference indexes on demand from the setup_custom_reference_index() function.

Changed the one instance in the where setup_reference() is used in the velvet wrapper.