thethemefoundry/twentytwelve — pull request #18 by obenland (2012-03-29 11:27:19+00:00)
Title: Move scripts and styles to functions.php and enqueue them there properly

Since TwentyTwelve will serve as a best practice example for Theme Developers, I would be thrilled if we could move all scripts and styles to functions.php, to adhere to this guideline in the Theme Review process.

From what I understand, leaving the comment-reply script in header.php is technically still acceptable, but let's set a good example! :)

Maybe, to top it off, we could add a comment to that html5.js script in header.php, explaining that scripts wrapped in conditionals there, are okay.