seandavi/CCR_NGS — pull request #5 by kdaily (2012-02-22 15:06:14+00:00)
Title: CollectRnaSeqMetrics added

I've added the code for picard, but not a ruffus task for it, since we don't have any SAM/BAM files for testing; I figure we should use the fastq files we have to make those files to make testing easier. We could also discuss the step in the ruffus pipeline for that, as well as how to get this moved to Biowulf.

Cheers,

Kenny