biopython/biopython — pull request #29 by brandoninvergo (2012-02-22 12:14:07+00:00)
Title: Paml parsetests

I updated all of the unit tests for the parsing of output by the PAML programs. A few changes were made to the Bio.Phylo.PAML module to fix failures with the new tests. In addition, I cleaned up the Tests/PAML resource directory to be cleaner and more structured. Finally, I added a script to that directory to provide a way to automatically generate the results files which are used in the tests, making future maintenance of the tests a bit more viable.