seandavi/CCR_NGS — pull request #3 by kdaily (2012-02-17 17:30:35+00:00)
Title: Added ruffus code for FastQC, testing config and samples files

I added in the ruffus code (it's great what you can do with it, and what is built in, like input file existence checks).

Wondering how to let the pipeline know that FastQC has been run, since I can't set an output file. I suppose I could use some sentinel file, or the zipped file that comes as output to FastQC?

Added basic config and sample files, any suggestions would be appreciated.

Moving on to picard RNAseqMetrics!