seandavi/CCR_NGS — pull request #1 by kdaily (2012-02-15 19:21:52+00:00)
Title: Fastqc

Started adding some code.

Added a module/script for running fastqc. Let me know how you like the setup - we used this structure of each class having a method to add optparse options as well as take the OptionParser object to populate the class; it was nice if you want to have a script that incorporates multiple classes, the options can be added easily.

I'll get to adding the ruffus part soon, reading about it now!

Kenny