al2na/genomation — pull request #3 by frenkiboy (2012-02-12 18:00:15+00:00)
Title: Pull request 3

dude, I overhauled a lot of code for scoreMatrix and scoreMatrixBin
the methods are now separate for RleList and modRleList - so it is easier to play with them without breaking something.
I broke the scoreMatrix and scoreMatrixBin into several small functions that can be found in the two folders.

I tried to build the package, but the stuff just doesn't like me, I get a lot of stupid messages. and the namespace file is not made in a proper way - it exports all functions and not only those specified in the documentation. (I think that the S3 function should stay hidden maybe).

Will work on it over the week.