jamescasbon/PyVCF — pull request #10 by arq5x (2012-01-21 19:16:37+00:00)
Title: Issue 2 sample objects

Hi James,

Nice work on the performance boost. I

1. added test coverage to test_vcf.py,
2. adhusted all of the _Record code to reflect your change from genotypes to sample
3. added new methods (aaf, get_hets, get_hom_alts, get_hom_refs),
4. updated the "called" logic to work even when aggro=False
5. tweaked a few loose ends.

This package is starting to become very useful indeed.