rnaseqr/RNASEQR — pull request #1 by claudejrogers (2012-01-07 08:17:16+00:00)
Title: Propose change to selected_the_multiply_mapped_reads_of_the_same_genomic...

Hello, I read your paper on RNASEQR with great interest.
My lab is beginning to do RNA seq. and I would like contribute to this project.

In this patch, I made a small change to the
selected_the_multiply_mapped_reads_of_the_same_genomic_position module,
rewriting the complement_sequence function.
Using str.translate() allows the underlying C API to iterate through the sequence
instead of the python interpreter, which should speed up the function by about an order on magnitude.