kmsquire/vcfCTools — pull request #1 by kmsquire (2011-12-03 10:34:35+00:00)
Title: Bug fix: output of different alleles from multiple records sometimes incorrect.

variant.cpp: Corrected bug when deciding whether or not to output
different alleles from multiple records.

When deciding whether or not to filter records from the first vcf file, bIter is irrelevant. Ditto for aIter and the second vcf file.

This sometimes causes problems when there are multiple records with multiple alternate alleles in each different records.