lh3/samtools — pull request #7 by peterjc (2011-11-17 16:44:11+00:00)
Title: Force standard 28 bytes empty BGZF GZIP block for no compression BAM

This avoids the following warning from uncompressed BAM files which don't end with the expected 28 byte empty BGZF block as an EOF marker:

[bam_header_read] EOF marker is absent. The input is probably truncated.

See mailing list discussion.

Thanks,

Peter