biopython/biopython — pull request #22 by brandoninvergo (2011-11-03 08:49:31+00:00)
Title: Parse/write Phylip sequential format

These changes and additions are for supporting reading and writing of the Phylip sequential format (see http://evolution.genetics.washington.edu/phylip/doc/main.html#inputfiles second half of "Data file format"). In addition to adding PhylipSequentialIterator and PhylipSequentialWriter classes to Bio.AlignIO.PhylipIO, I also edited Tests/test_AlignIO.py, I added two simple test files to Tests/Phylip and I regenerated the output of test_AlignIO.py. The unit tests passed in Linux using Python 2.7.2 and Python 3.2.2

Redmine Issue reference: https://redmine.open-bio.org/issues/3303