vadimzalunin/crammer — Issue #17: Incorrect 'mate reversed' bit flag for half-mapped pairs with reverse mapped mate
Author: vadimzalunin
Created: 2012-03-06 11:01:36+00:00
State: open

5. Where a read aligns in the reverse direction (flag & 16) and the mate read doesn't align (read & 8) cram appears to set the mate reversed bit (flag & 32)