gjospin/PhyloSift — Issue #119: Use lastal instead of bowtie2 for rna search of long seqs
Author: koadman
Created: 2012-03-06 06:15:05+00:00
State: open

bowtie2 requires many GB of memory to search seqs > 1Mb long and this can throw linux systems into fits.

lastal can do the same searches with reasonable memory usage.