CellProfiler/CellProfiler — Issue #299: LoadSingleImage Fails on cluster when input image location is "Elsewhere"
Author: dlogan
Created: 2012-03-01 21:42:34+00:00
State: open

This simple pipeline:
https://imageweb.broadinstitute.org/imaging/analysis/People/David/tests/LoadSingleImage_error/PIPE_test_LoadSingleImage.cp
succeeds locally, but fails when run on the cluster. An example run is found here:
http://imagingweb.broadinstitute.org/batchprofiler/cgi-bin/CellProfiler2.0/CellProfiler/BatchProfiler/ViewBatch.py?batch_id=3535

It seems like LoadSingleImage paths are not getting translated by CreateBatchFiles. The first setting in LoadSingleImage.py is "Input image file location" and is set to "Elsewhere". This pipeline is fixed by making the path relative, using the "Default output subfolder" option.