bioruby/bioruby — Issue #47: remote BLAST not working
Author: audy
Created: 2012-02-27 17:17:28+00:00
State: open

Using Ruby 1.9.2 and bio (HEAD):

```ruby
seq = Bio::Sequence::AA.new('MFRTKRSALVRRLWRSRAPGGEDEEEGAGGGGGGGELRGE')

blast = Bio::Blast.remote 'blastp', 'swissprot', '-e 0.0001', 'genomenet'

blast.query(seq)
```

produces:

```
/Users/audy/.rvm/gems/ruby-1.9.2-p290/bundler/gems/bioruby-c552aa3a6773/lib/bio/appl/blast/genomenet.rb:251:in `exec_genomenet': cannot understand response (RuntimeError)
from /Users/audy/.rvm/gems/ruby-1.9.2-p290/bundler/gems/bioruby-c552aa3a6773/lib/bio/appl/blast.rb:368:in `query'
from ./phone_blast.rb:10:in `

'
```