gjospin/PhyloSift — Issue #101: Remove user input for the monkey's output package name
Author: gjospin
Created: 2012-02-27 22:24:59+00:00
State: open

The reference package's directory name needs to be the same as the core names of most of the files inside the directory for PS to understand it.

Instead of asking the user for input on a directory name, we need to grab the core of the alignment file and use that as a directory name.