gjospin/PhyloSift — Issue #88: stream sequences through pipeline until placement stage
Author: koadman
Created: 2012-02-26 13:41:36+00:00
State: open

A new version of rapsearch2 exists which supports streaming, so all programs up to the placement stage can stream input to output. This could enable very fast analysis of microbial community structure on the order of minutes instead of hours to initial results.