CellProfiler/CellProfiler — Issue #295: mac homebrew install
Author: jmcpuser
Created: 2012-02-21 17:59:12+00:00
State: open

Hi, I apologize if this is not the place, but I tried to install the Homebrew cellprofiler development version for mac and it failed pretty far into the process. My mac is brand new and running 10.7.3 Thanks for taking a look! -John

Here's the message from the pip.log:

/Users/jmclaughlin/CPhomebrew/bin/gfortran -Wall -arch i686 -arch x86_64 -Wall -undefined dynamic_lookup -bundle build/temp.macosx-10.6-intel-2.7/build/src.macosx-10.6-intel-2.7/scipy/fftpack/_fftpackmodule.o build/temp.macosx-10.6-intel-2.7/scipy/fftpack/src/zfft.o build/temp.macosx-10.6-intel-2.7/scipy/fftpack/src/drfft.o build/temp.macosx-10.6-intel-2.7/scipy/fftpack/src/zrfft.o build/temp.macosx-10.6-intel-2.7/scipy/fftpack/src/zfftnd.o build/temp.macosx-10.6-intel-2.7/build/src.macosx-10.6-intel-2.7/scipy/fftpack/src/dct.o build/temp.macosx-10.6-intel-2.7/build/src.macosx-10.6-intel-2.7/fortranobject.o -Lbuild/temp.macosx-10.6-intel-2.7 -ldfftpack -lfftpack -lgfortran -o build/lib.macosx-10.6-intel-2.7/scipy/fftpack/_fftpack.so

ld: library not found for -lgcc

ld: library not found for -lgcc

lipo: can't figure out the architecture type of: /var/folders/h9/mzp4k_r93pq1fzf6b9_4ljh816lyrk/T//ccPQ6k9T.out

ld: library not found for -lgcc

ld: library not found for -lgcc

lipo: can't figure out the architecture type of: /var/folders/h9/mzp4k_r93pq1fzf6b9_4ljh816lyrk/T//ccPQ6k9T.out

error: Command "/Users/jmclaughlin/CPhomebrew/bin/gfortran -Wall -arch i686 -arch x86_64 -Wall -undefined dynamic_lookup -bundle build/temp.macosx-10.6-intel-2.7/build/src.macosx-10.6-intel-2.7/scipy/fftpack/_fftpackmodule.o build/temp.macosx-10.6-intel-2.7/scipy/fftpack/src/zfft.o build/temp.macosx-10.6-intel-2.7/scipy/fftpack/src/drfft.o build/temp.macosx-10.6-intel-2.7/scipy/fftpack/src/zrfft.o build/temp.macosx-10.6-intel-2.7/scipy/fftpack/src/zfftnd.o build/temp.macosx-10.6-intel-2.7/build/src.macosx-10.6-intel-2.7/scipy/fftpack/src/dct.o build/temp.macosx-10.6-intel-2.7/build/src.macosx-10.6-intel-2.7/fortranobject.o -Lbuild/temp.macosx-10.6-intel-2.7 -ldfftpack -lfftpack -lgfortran -o build/lib.macosx-10.6-intel-2.7/scipy/fftpack/_fftpack.so" failed with exit status 1

----------------------------------------

Command /Users/jmclaughlin/CPhomebrew/Cellar/cellprofiler-dev-python/1/cpdev/bin/python -c "import setuptools;__file__='/Users/jmclaughlin/CPhomebrew/Cellar/cellprofiler-dev-python/1/cpdev/build/scipy/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --single-version-externally-managed --record /var/folders/h9/mzp4k_r93pq1fzf6b9_4ljh816lyrk/T/pip-rNINyf-record/install-record.txt --install-headers /Users/jmclaughlin/CPhomebrew/Cellar/cellprofiler-dev-python/1/cpdev/bin/../include/site/python2.7 failed with error code 1 in /Users/jmclaughlin/CPhomebrew/Cellar/cellprofiler-dev-python/1/cpdev/build/scipy

Exception information:
Traceback (most recent call last):
File "/Users/jmclaughlin/CPhomebrew/Cellar/cellprofiler-dev-python/1/cpdev/lib/python2.7/site-packages/pip-1.1-py2.7.egg/pip/basecommand.py", line 104, in main
status = self.run(options, args)
File "/Users/jmclaughlin/CPhomebrew/Cellar/cellprofiler-dev-python/1/cpdev/lib/python2.7/site-packages/pip-1.1-py2.7.egg/pip/commands/install.py", line 250, in run
requirement_set.install(install_options, global_options)
File "/Users/jmclaughlin/CPhomebrew/Cellar/cellprofiler-dev-python/1/cpdev/lib/python2.7/site-packages/pip-1.1-py2.7.egg/pip/req.py", line 1133, in install
requirement.install(install_options, global_options)
File "/Users/jmclaughlin/CPhomebrew/Cellar/cellprofiler-dev-python/1/cpdev/lib/python2.7/site-packages/pip-1.1-py2.7.egg/pip/req.py", line 577, in install
cwd=self.source_dir, filter_stdout=self._filter_install, show_stdout=False)
File "/Users/jmclaughlin/CPhomebrew/Cellar/cellprofiler-dev-python/1/cpdev/lib/python2.7/site-packages/pip-1.1-py2.7.egg/pip/__init__.py", line 256, in call_subprocess
% (command_desc, proc.returncode, cwd))
InstallationError: Command /Users/jmclaughlin/CPhomebrew/Cellar/cellprofiler-dev-python/1/cpdev/bin/python -c "import setuptools;__file__='/Users/jmclaughlin/CPhomebrew/Cellar/cellprofiler-dev-python/1/cpdev/build/scipy/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --single-version-externally-managed --record /var/folders/h9/mzp4k_r93pq1fzf6b9_4ljh816lyrk/T/pip-rNINyf-record/install-record.txt --install-headers /Users/jmclaughlin/CPhomebrew/Cellar/cellprofiler-dev-python/1/cpdev/bin/../include/site/python2.7 failed with error code 1 in /Users/jmclaughlin/CPhomebrew/Cellar/cellprofiler-dev-python/1/cpdev/build/scipy