joey711/phyloseq — Issue #73: Additional graphic options for makenetwork()
Author: joey711
Created: 2012-02-14 01:30:35+00:00
State: open
Labels: Feature

Consider porting the coordinate output to ggplot2 graphics, as you might do in other applications. The difficulty here would be getting the correct edge lines as well as the node coordinates.

Example:
```R
data(enterotype)
makenetwork(enterotype)
```

The above code is nice, but there is no way to verify in phyloseq (yet) that the three groups agree with the enterotype designation.

Also, consider changing the name to `plot_network()` or something else that agrees better with the other plotting functions in phyloseq. This is probably a good idea for `taxaplot()` as well, which should probably be `plot_taxabars` or so.