pezmaster31/bamtools — Issue #34: BamAlignment::RefID broken
Author: davidhanna
Created: 2012-02-07 02:05:20+00:00
State: open

Hi all,

It looks like the RefID integer in the BamAlignment class is always populated as = 0 by the BamReader GetNextAlignment function. This makes it pretty hard to use to the Jump function in BamReader. I'll try to track down why this output is given, but thought it would be good to confirm others have the same issue.

Thanks,
DSH