gjospin/Amphora-2 — Issue #24: PD pruning during marker database update
Author: koadman
Created: 2012-01-30 23:34:12+00:00
State: open

Currently the marker databases include sequences from all genomes. Many of these are 100% identical to each other and don't offer any additional phylogenetic resolution. Inclusion of these sequences makes the marker gene database large (currently > 1GB). PD pruning could be used to include a subset of sequences that are most informative.