yarden/MISO — Issue #18: What mapper does MISO supports?
Author: marcowanger
Created: 2012-01-27 18:57:50+00:00
State: open

I tried to run MISO to estimate insert size and compute-genes-psi

With identical parameters, annotation file provided by MISO and dataset.

Both insert size stimate and compute psi failed for BAM file generated from MapSplice and SpliceMap (both latest version). Only Tophat output's BAM run smoothly.

e.g. for SpliceMap and MapSplice's BAM, during compute-genes-psi, no files are output to output-directory. It always shows "only 0 reads in gene, skipping...."

Would like to ask which reads mapper were tested?

Thanks.