timflutre/quantgen — Issue #2: compute summary stats by reading SNPs one by one
Author: timflutre
Created: 2012-01-27 21:54:42+00:00
State: open

In "get_summary_stats.cpp", allow to skip parameter "--links" usually used to precise which SNPs are in cis of which genes. To do so efficiently, compute summary stats for each SNP by reading the genotype file line by line. This will therefore allow to easily compute summary stats for all SNPs, whether they are in cis or trans of any gene.